Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10876955	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10876956	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[GIH][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11172021	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11172038	0.83[EUR][1000 genomes]
rs11172046	0.92[EUR][1000 genomes]
rs11172064	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11172065	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11172066	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11613486	0.84[EUR][1000 genomes]
rs4237807	0.85[EUR][1000 genomes]
rs4415812	0.85[EUR][1000 genomes]
rs4435043	0.85[EUR][1000 genomes]
rs4477472	0.85[EUR][1000 genomes]
rs4759035	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4759260	1.00[JPT][hapmap]
rs4759262	0.83[EUR][1000 genomes]
rs4759266	0.85[EUR][1000 genomes]
rs7295197	0.85[EUR][1000 genomes]
rs7307358	0.85[EUR][1000 genomes]
rs7311658	0.85[EUR][1000 genomes]
rs7964087	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	nsv899107	chr12:57293436-57321212	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17119149	NCKAP1L	cis	parietal	SCAN
rs17119149	CCDC92	trans	lymphoblastoid	seeQTL
rs17119149	RDH5	cis	parietal	SCAN
rs17119149	RDH16	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57308800-57311800	Enhancers	Liver	Liver

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