Variant report

Variant	rs17119331
Chromosome Location	chr14:84441623-84441624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17119336	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17119559	0.85[EUR][1000 genomes]
rs8011396	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84436600-84442000	Weak transcription	Ovary	ovary
2	chr14:84439600-84443000	Enhancers	Adipose Nuclei	Adipose
3	chr14:84440000-84443000	Enhancers	Rectal Smooth Muscle	rectum
4	chr14:84440000-84443000	Enhancers	Hela-S3	cervix
5	chr14:84440600-84442000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:84440600-84443000	Enhancers	Colon Smooth Muscle	Colon
7	chr14:84440600-84444200	Enhancers	Fetal Heart	heart
8	chr14:84440800-84443000	Enhancers	Fetal Stomach	stomach
9	chr14:84441200-84442200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:84441200-84442200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:84441200-84442200	Weak transcription	Psoas Muscle	Psoas
12	chr14:84441200-84442400	Weak transcription	Pancreas	Pancrea
13	chr14:84441200-84442800	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr14:84441200-84443000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr14:84441400-84441800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:84441400-84442800	Weak transcription	Spleen	Spleen
17	chr14:84441400-84443200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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