Variant report

Variant	rs1711954
Chromosome Location	chr6:1410209-1410210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:1409205..1411378-chr6:1424003..1426290,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1009095	0.86[AFR][1000 genomes]
rs1711960	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1711961	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1711962	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1737767	0.89[AFR][1000 genomes]
rs1737769	0.82[AMR][1000 genomes]
rs1737776	0.83[EUR][1000 genomes]
rs1737777	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4317453	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024111	chr6:1231850-1730146	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv883369	chr6:1244837-1416849	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1017614	chr6:1248650-1423502	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1021924	chr6:1254891-1736995	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv538082	chr6:1254891-1736995	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv883370	chr6:1349828-1426790	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv917248	chr6:1365437-1627813	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv883371	chr6:1374277-1416849	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv883372	chr6:1374277-1426790	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1408400-1412600	Weak transcription	Fetal Lung	lung
2	chr6:1408800-1416400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:1409400-1410400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr6:1409400-1410800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr6:1409400-1410800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:1409400-1410800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:1409400-1410800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:1409400-1410800	Bivalent Enhancer	Fetal Stomach	stomach
9	chr6:1409600-1410600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr6:1409800-1410400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:1410000-1410400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr6:1410000-1410600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:1410000-1410600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:1410000-1410600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr6:1410000-1410800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:1410000-1410800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:1410200-1410400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr6:1410200-1410400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:1410200-1410400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr6:1410200-1410600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
21	chr6:1410200-1410800	Enhancers	HUES64 Cell Line	embryonic stem cell

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