Variant report
| Variant | rs17120090 |
|---|---|
| Chromosome Location | chr12:58375262-58375263 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr12:58375105-58375300 | K562 | blood: | n/a | chr12:58375180-58375193 chr12:58375182-58375193 chr12:58375135-58375147 chr12:58375182-58375191 chr12:58375180-58375191 |
| 2 | CEBPB | chr12:58375012-58375314 | HepG2 | liver: | n/a | chr12:58375180-58375193 chr12:58375182-58375193 chr12:58375135-58375147 chr12:58375182-58375191 chr12:58375180-58375191 |
| 3 | CEBPB | chr12:58375121-58375318 | H1-hESC | embryonic stem cell: | n/a | chr12:58375180-58375193 chr12:58375182-58375193 chr12:58375135-58375147 chr12:58375182-58375191 chr12:58375180-58375191 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RN7SKP65 | TF binding region |
rSNPs within LD-proxies of this variant (count:1)
| rs_ID | r2[population] |
|---|---|
| rs17120122 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv559046 | chr12:58162085-58478598 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 261 gene(s) | inside rSNPs | diseases |
| 2 | nsv523853 | chr12:58350631-58386722 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1051716 | chr12:58374313-58410810 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
