Variant report

Variant	rs17120325
Chromosome Location	chr10:91137192-91137193
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10509571	0.81[CEU][hapmap]
rs10509572	0.95[CEU][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap]
rs10887950	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs10887953	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10887959	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs11203063	0.86[JPT][hapmap];0.85[YRI][hapmap]
rs11203099	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs11203109	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11203115	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs12244233	0.95[CEU][hapmap];0.93[JPT][hapmap]
rs12255504	0.95[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs1332330	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs1591051	0.95[CEU][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs17121248	0.90[CEU][hapmap]
rs2274878	0.85[CEU][hapmap]
rs303212	0.90[YRI][hapmap]
rs3780878	0.95[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs4339948	0.81[CEU][hapmap]
rs4630205	0.80[CEU][hapmap]
rs6586183	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs6586196	0.85[CEU][hapmap]
rs7088579	0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap]
rs7090346	0.95[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7897619	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs7897873	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs7916812	0.85[CEU][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv1063458	chr10:91137191-91137192	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17120325	IFIT5	cis	multi-tissue	Pritchard

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91129400-91138000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:91134200-91138000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:91134800-91142600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:91135000-91150200	Weak transcription	Fetal Brain Male	brain
5	chr10:91135200-91138200	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:91135800-91140800	Weak transcription	Fetal Heart	heart
7	chr10:91137000-91137200	Enhancers	Brain Substantia Nigra	brain

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