Variant report

Variant	rs17120572
Chromosome Location	chr12:58693788-58693789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17120561	1.00[AMR][1000 genomes]
rs17120589	1.00[AMR][1000 genomes]
rs2659638	1.00[AMR][1000 genomes]
rs2720171	1.00[AMR][1000 genomes]
rs2720172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58691000-58695600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:58691200-58695800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:58691200-58696000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:58692200-58694000	Enhancers	Fetal Brain Male	brain
5	chr12:58692200-58695600	Weak transcription	A549	lung
6	chr12:58692800-58694800	Weak transcription	Psoas Muscle	Psoas
7	chr12:58693200-58695000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:58693200-58695800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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