Variant report

Variant	rs17122322
Chromosome Location	chr10:91238209-91238210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12268958	0.84[EUR][1000 genomes]
rs17122507	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17122902	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes]
rs7918159	1.00[CEU][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91234600-91238800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:91234600-91240400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:91234600-91242400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:91234600-91242600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr10:91235200-91240400	Enhancers	NH-A	brain
6	chr10:91235600-91238800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:91235600-91239200	Enhancers	HMEC	breast
8	chr10:91235600-91239800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:91235600-91243400	Enhancers	HSMM	muscle
10	chr10:91235800-91239000	Enhancers	Left Ventricle	heart
11	chr10:91236600-91238400	Weak transcription	Brain Substantia Nigra	brain
12	chr10:91236800-91238600	Weak transcription	Brain Anterior Caudate	brain
13	chr10:91237000-91240800	Weak transcription	A549	lung
14	chr10:91237600-91238400	Enhancers	Liver	Liver
15	chr10:91237600-91238800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:91237600-91239400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:91237600-91239400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:91237600-91240200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:91237600-91240200	Enhancers	Colon Smooth Muscle	Colon
20	chr10:91237600-91241000	Enhancers	Fetal Lung	lung
21	chr10:91237800-91238600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:91237800-91238800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:91237800-91239000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr10:91237800-91239000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:91237800-91239000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:91237800-91239000	Enhancers	Primary B cells from cord blood	blood
27	chr10:91237800-91239000	Enhancers	Placenta	Placenta
28	chr10:91237800-91239000	Enhancers	Pancreas	Pancrea
29	chr10:91237800-91239000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr10:91237800-91239000	Enhancers	NHEK	skin
31	chr10:91237800-91239200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr10:91237800-91239200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:91237800-91239200	Enhancers	Right Atrium	heart
34	chr10:91237800-91239400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:91237800-91239400	Enhancers	Primary B cells from peripheral blood	blood
36	chr10:91237800-91239400	Enhancers	Stomach Smooth Muscle	stomach
37	chr10:91237800-91239800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:91237800-91240000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:91237800-91240000	Enhancers	Fetal Intestine Large	intestine
40	chr10:91237800-91240000	Enhancers	Fetal Intestine Small	intestine
41	chr10:91237800-91240200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:91237800-91241000	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr10:91237800-91241400	Enhancers	HSMMtube	muscle
44	chr10:91237800-91242000	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr10:91237800-91242200	Enhancers	Adipose Nuclei	Adipose
46	chr10:91237800-91242200	Enhancers	Rectal Smooth Muscle	rectum
47	chr10:91237800-91242400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:91237800-91242400	Enhancers	NHDF-Ad	bronchial
49	chr10:91237800-91242400	Enhancers	Osteobl	bone
50	chr10:91238000-91238400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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