Variant report

Variant	rs17122627
Chromosome Location	chr1:62134130-62134131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1286824	1.00[AMR][1000 genomes]
rs1320528	1.00[EUR][1000 genomes]
rs17122575	1.00[EUR][1000 genomes]
rs2172958	1.00[EUR][1000 genomes]
rs57770645	1.00[AFR][1000 genomes]
rs60613275	1.00[EUR][1000 genomes]
rs61568748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6587936	1.00[EUR][1000 genomes]
rs72923617	1.00[EUR][1000 genomes]
rs72923619	1.00[EUR][1000 genomes]
rs72927656	1.00[AMR][1000 genomes]
rs72929633	1.00[AMR][1000 genomes]
rs7535499	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv508226	chr1:62091093-62140604	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62103400-62146400	Weak transcription	Gastric	stomach
2	chr1:62120400-62148200	Weak transcription	Aorta	Aorta
3	chr1:62126000-62145800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:62126000-62148800	Weak transcription	Left Ventricle	heart
5	chr1:62126000-62165200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:62131600-62151400	Weak transcription	Lung	lung
7	chr1:62131600-62163800	Weak transcription	Thymus	Thymus
8	chr1:62131800-62139000	Weak transcription	Primary T cells from cord blood	blood
9	chr1:62133800-62135800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:62134000-62134200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:62134000-62135000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links