Variant report

Variant	rs17122757
Chromosome Location	chr12:60026721-60026722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1497473	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122680	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122682	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122685	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122687	1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17122689	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122718	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122739	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122764	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17122766	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122781	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122783	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122785	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122790	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122791	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122795	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122807	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs17122818	0.81[ASN][1000 genomes]
rs17122823	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122827	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122830	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122837	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122838	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122843	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122846	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122849	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17122850	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs972132	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982321	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv899131	chr12:59942122-60124089	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1048949	chr12:59974039-60041477	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60006400-60031400	Weak transcription	Left Ventricle	heart
2	chr12:60007200-60031600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:60009800-60033200	Weak transcription	Ovary	ovary
4	chr12:60013600-60055400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:60014400-60037400	Weak transcription	Primary T cells from cord blood	blood
6	chr12:60015200-60027600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr12:60015200-60030400	Weak transcription	Fetal Heart	heart
8	chr12:60015200-60037400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr12:60015200-60038000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr12:60015400-60038000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:60018800-60044400	Weak transcription	Pancreas	Pancrea
12	chr12:60019000-60027600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr12:60020800-60044800	Weak transcription	NHDF-Ad	bronchial
14	chr12:60021200-60031400	Weak transcription	Esophagus	oesophagus
15	chr12:60021200-60038000	Weak transcription	Dnd41	blood
16	chr12:60022400-60044800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:60024000-60036400	Weak transcription	Primary B cells from cord blood	blood
18	chr12:60024000-60040600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:60024200-60027000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:60024200-60030600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr12:60024800-60027400	Enhancers	Adipose Nuclei	Adipose
22	chr12:60026000-60028400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:60026200-60026800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr12:60026400-60027400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr12:60026400-60027400	Enhancers	Brain Anterior Caudate	brain
26	chr12:60026400-60028400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr12:60026400-60037200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr12:60026600-60027000	Enhancers	Right Atrium	heart
29	chr12:60026600-60027600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr12:60026600-60033200	Weak transcription	Aorta	Aorta
31	chr12:60026600-60089200	Weak transcription	Gastric	stomach

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