Variant report

Variant	rs17122820
Chromosome Location	chr12:60069354-60069355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60062172..60063727-chr12:60068720..60070295,2	MCF-7	breast:
2	chr12:60062523..60065059-chr12:60067387..60069587,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17122803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7960680	1.00[EUR][1000 genomes]
rs7966616	1.00[EUR][1000 genomes]
rs7975879	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv899131	chr12:59942122-60124089	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60026600-60089200	Weak transcription	Gastric	stomach
2	chr12:60045600-60071800	Weak transcription	Ovary	ovary
3	chr12:60045800-60085400	Weak transcription	NHDF-Ad	bronchial
4	chr12:60045800-60099800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:60050800-60098600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:60055400-60071000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr12:60058800-60080200	Weak transcription	Fetal Heart	heart
8	chr12:60059400-60071600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:60059800-60071800	Weak transcription	Psoas Muscle	Psoas
10	chr12:60061600-60071400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr12:60061600-60074800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr12:60061800-60071600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr12:60061800-60071600	Weak transcription	Esophagus	oesophagus
14	chr12:60062200-60071000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr12:60062200-60071600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:60062200-60071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr12:60062200-60071600	Weak transcription	Fetal Stomach	stomach
18	chr12:60062200-60071600	Weak transcription	Pancreas	Pancrea
19	chr12:60062200-60071600	Weak transcription	Right Ventricle	heart
20	chr12:60062200-60071600	Weak transcription	Thymus	Thymus
21	chr12:60062200-60071800	Weak transcription	Aorta	Aorta
22	chr12:60062200-60085800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:60062400-60071000	Weak transcription	Dnd41	blood
24	chr12:60064400-60071200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr12:60064800-60071600	Weak transcription	Left Ventricle	heart
26	chr12:60065000-60071200	Weak transcription	Adipose Nuclei	Adipose
27	chr12:60066800-60071600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr12:60067600-60070000	Strong transcription	Primary B cells from cord blood	blood
29	chr12:60067800-60071600	Weak transcription	Spleen	Spleen
30	chr12:60068600-60069400	Strong transcription	Primary T cells from cord blood	blood
31	chr12:60068600-60069600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr12:60069000-60069400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr12:60069000-60069600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr12:60069200-60069400	Enhancers	Right Atrium	heart
35	chr12:60069200-60070600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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