Variant report

Variant	rs17123021
Chromosome Location	chr10:91283699-91283700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12765829	0.89[CEU][hapmap]
rs12784228	0.89[CEU][hapmap]
rs1556610	0.84[CEU][hapmap]
rs17123166	0.89[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17123666	0.89[CEU][hapmap]
rs17479692	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68162511	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17123021	FLJ37201	cis	parietal	SCAN
rs17123021	IFIT1	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91276400-91285600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:91276600-91284400	Enhancers	Fetal Heart	heart
3	chr10:91278200-91285800	Weak transcription	Gastric	stomach
4	chr10:91278200-91286000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:91278200-91286400	Weak transcription	Lung	lung
6	chr10:91279400-91285400	Weak transcription	HSMMtube	muscle
7	chr10:91279400-91294800	Weak transcription	HSMM	muscle
8	chr10:91279600-91292000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:91280000-91284600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:91281200-91285400	Weak transcription	Fetal Intestine Small	intestine
11	chr10:91281200-91285800	Weak transcription	Ovary	ovary
12	chr10:91281600-91284600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:91282200-91283800	Enhancers	Osteobl	bone
14	chr10:91282200-91284200	Weak transcription	Left Ventricle	heart
15	chr10:91282200-91285600	Weak transcription	Fetal Lung	lung
16	chr10:91282200-91285800	Weak transcription	Fetal Stomach	stomach
17	chr10:91282800-91283800	Bivalent Enhancer	NHDF-Ad	bronchial
18	chr10:91282800-91284600	Enhancers	Pancreas	Pancrea
19	chr10:91283000-91283800	Enhancers	Aorta	Aorta
20	chr10:91283600-91284400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:91283600-91285800	Weak transcription	Right Ventricle	heart
22	chr10:91283600-91286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:91283600-91286400	Weak transcription	Right Atrium	heart
24	chr10:91283600-91294600	Weak transcription	Muscle Satellite Cultured Cells	--

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