Variant report

Variant	rs17123060
Chromosome Location	chr12:60204956-60204957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12718000	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap]
rs12811364	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12812257	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12816372	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12824130	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12824395	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12824600	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12826493	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs12826693	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs12828834	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1619563	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1693597	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1693598	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1693603	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17122972	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17122978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17122980	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17122985	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17122992	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17649791	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1795883	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1795889	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1795893	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1795898	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1882504	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1882505	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2178671	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2178672	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2222878	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2222879	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2244244	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs2706287	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706289	0.88[CEU][hapmap]
rs2706290	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706291	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706292	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2706293	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2706300	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2706304	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706307	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2706308	1.00[JPT][hapmap]
rs2706310	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706311	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706312	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706317	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706318	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2706320	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706321	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2706322	1.00[JPT][hapmap]
rs2711651	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2711652	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2711654	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2711658	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2711660	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2711662	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2711664	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2711667	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2711669	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2711676	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2711678	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2711679	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2711680	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2711692	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3763979	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4432061	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];0.85[YRI][hapmap]
rs7976838	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9325168	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899132	chr12:60087572-60211476	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv899135	chr12:60156046-60228610	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv559102	chr12:60164408-60221898	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60190000-60206200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:60198200-60206000	Weak transcription	Aorta	Aorta

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