Variant report

Variant	rs17123428
Chromosome Location	chr11:119759344-119759345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs737421	0.86[AFR][1000 genomes]
rs737441	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119746000-119762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119747200-119768200	Weak transcription	Fetal Intestine Small	intestine
3	chr11:119747600-119762400	Weak transcription	Esophagus	oesophagus
4	chr11:119749600-119760000	Enhancers	Fetal Heart	heart
5	chr11:119755200-119760400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:119757400-119760400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:119757600-119760000	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr11:119758400-119759600	Enhancers	Spleen	Spleen
9	chr11:119758400-119760000	Enhancers	Left Ventricle	heart
10	chr11:119758400-119760000	Enhancers	Right Atrium	heart
11	chr11:119758600-119759400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:119758600-119759800	Enhancers	Fetal Brain Male	brain
13	chr11:119758600-119761600	Enhancers	Right Ventricle	heart
14	chr11:119758800-119764000	Enhancers	Brain Hippocampus Middle	brain
15	chr11:119759200-119759400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr11:119759200-119759800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr11:119759200-119759800	Bivalent Enhancer	Fetal Stomach	stomach
18	chr11:119759200-119760200	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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