Variant report

Variant	rs17124620
Chromosome Location	chr11:120845303-120845304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11600141	1.00[AMR][1000 genomes]
rs11601810	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11602486	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11605147	1.00[AMR][1000 genomes]
rs17124516	1.00[AMR][1000 genomes]
rs17124518	1.00[AMR][1000 genomes]
rs17124555	1.00[AMR][1000 genomes]
rs35828972	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4601792	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120833400-120856400	Weak transcription	Ovary	ovary
2	chr11:120836800-120856400	Weak transcription	Brain Anterior Caudate	brain
3	chr11:120839200-120845800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:120841000-120845400	Weak transcription	Fetal Lung	lung
5	chr11:120842400-120846600	Enhancers	HSMMtube	muscle
6	chr11:120845000-120845600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:120845000-120847800	Enhancers	HSMM	muscle
8	chr11:120845200-120845400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:120845200-120845600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:120845200-120846000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:120845200-120846000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:120845200-120846000	Enhancers	HUVEC	blood vessel
13	chr11:120845200-120846200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:120845200-120846400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:120845200-120846800	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links