Variant report

Variant	rs17125082
Chromosome Location	chr10:110516320-110516321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10509877	0.99[ASN][1000 genomes]
rs11593246	0.84[ASN][1000 genomes]
rs11596384	0.84[ASN][1000 genomes]
rs11598379	0.84[ASN][1000 genomes]
rs12256452	0.94[ASN][1000 genomes]
rs12258219	0.95[ASN][1000 genomes]
rs13376756	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17125149	0.82[ASN][1000 genomes]
rs17125154	0.82[ASN][1000 genomes]
rs17125157	0.82[ASN][1000 genomes]
rs1890097	0.82[ASN][1000 genomes]
rs4258310	0.82[ASN][1000 genomes]
rs4329606	0.82[ASN][1000 genomes]
rs4333961	0.84[ASN][1000 genomes]
rs55901720	0.82[ASN][1000 genomes]
rs56127946	0.81[ASN][1000 genomes]
rs61684874	0.83[ASN][1000 genomes]
rs66533722	0.83[ASN][1000 genomes]
rs66596379	0.82[ASN][1000 genomes]
rs66666352	0.84[ASN][1000 genomes]
rs66854714	0.84[ASN][1000 genomes]
rs67026641	0.82[ASN][1000 genomes]
rs67421416	0.82[ASN][1000 genomes]
rs67673940	0.84[ASN][1000 genomes]
rs67687537	0.84[ASN][1000 genomes]
rs67837870	0.82[ASN][1000 genomes]
rs68051059	0.84[ASN][1000 genomes]
rs7073419	0.84[ASN][1000 genomes]
rs7083659	0.83[ASN][1000 genomes]
rs72477615	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72828046	0.84[ASN][1000 genomes]
rs72828053	0.84[ASN][1000 genomes]
rs73344746	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3429369	chr10:110454775-110753351	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2758240	chr10:110458987-110643496	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759782	chr10:110458987-110643496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110516200-110517600	Weak transcription	NH-A	brain

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