Variant report

Variant	rs17125417
Chromosome Location	chr1:102246949-102246950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17125320	0.94[EUR][1000 genomes]
rs17125412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106119	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs953391	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv871513	chr1:102243101-102302831	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102246200-102247600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:102246200-102247600	Enhancers	Fetal Lung	lung
3	chr1:102246600-102247400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:102246600-102247600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:102246600-102247600	Enhancers	Fetal Heart	heart
6	chr1:102246600-102247800	Enhancers	Dnd41	blood
7	chr1:102246800-102247400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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