Variant report

Variant	rs17125473
Chromosome Location	chr11:121444811-121444812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11218360	0.81[ASN][1000 genomes]
rs11604897	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12274536	0.80[ASN][1000 genomes]
rs12274541	0.80[ASN][1000 genomes]
rs12287339	0.81[ASN][1000 genomes]
rs1620130	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17125497	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17125523	0.81[ASN][1000 genomes]
rs2282647	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3737529	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs3781831	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781834	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781836	0.87[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3781837	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58698151	0.98[ASN][1000 genomes]
rs59260691	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7120354	0.98[ASN][1000 genomes]
rs73595281	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:121414000-121452400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:121416400-121451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
6	chr11:121417000-121452400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:121417600-121452400	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:121418000-121451800	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:121425000-121456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:121425400-121448000	Weak transcription	Stomach Mucosa	stomach
11	chr11:121428200-121451400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr11:121430800-121446200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:121431000-121466400	Weak transcription	Ovary	ovary
14	chr11:121432800-121450000	Weak transcription	Aorta	Aorta
15	chr11:121434400-121451200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:121434600-121453200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:121434800-121451800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:121435200-121446200	Weak transcription	Fetal Kidney	kidney
19	chr11:121435200-121464800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:121436200-121450400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr11:121437600-121449600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:121437800-121445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:121437800-121446600	Weak transcription	Right Atrium	heart
24	chr11:121437800-121447800	Weak transcription	Gastric	stomach
25	chr11:121437800-121449600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:121437800-121450000	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr11:121437800-121453600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:121438000-121448200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:121438000-121449000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:121438200-121451200	Strong transcription	HepG2	liver
31	chr11:121438400-121446600	Weak transcription	HMEC	breast
32	chr11:121438400-121453600	Weak transcription	Colonic Mucosa	Colon
33	chr11:121439000-121449200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:121440600-121447400	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr11:121440600-121449800	Strong transcription	Dnd41	blood
36	chr11:121440600-121450400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:121440600-121450800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:121440600-121485000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:121440800-121447600	Strong transcription	Fetal Thymus	thymus
40	chr11:121440800-121450200	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr11:121440800-121450200	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr11:121440800-121452000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:121441400-121447200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:121441400-121449800	Genic enhancers	Brain Hippocampus Middle	brain
45	chr11:121441400-121451400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:121441600-121445400	Genic enhancers	GM12878-XiMat	blood
47	chr11:121441600-121447800	Strong transcription	Primary B cells from cord blood	blood
48	chr11:121441800-121445800	Weak transcription	Fetal Lung	lung
49	chr11:121442200-121445000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:121442200-121445400	Strong transcription	Primary B cells from peripheral blood	blood

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