Variant report

Variant	rs17125708
Chromosome Location	chr1:102373093-102373094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17125670	1.00[AMR][1000 genomes]
rs17125723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17125733	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17125734	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1004240	chr1:102360610-102428344	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012856	chr1:102360610-102438432	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520768	chr1:102366140-102435130	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2756852	chr1:102372339-102417093	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2758953	chr1:102372339-102417093	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102370000-102373200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:102370400-102373600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:102370800-102373400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:102370800-102373600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:102371200-102373200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:102372200-102373400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:102372600-102373400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:102372800-102373200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:102372800-102373400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:102373000-102373200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:102373000-102373200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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