Variant report

Variant	rs17126143
Chromosome Location	chr11:121985336-121985337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11606553	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17126101	0.84[EUR][1000 genomes]
rs17126105	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17126108	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17126110	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17126112	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832288	chr11:121962691-122161533	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	805 gene(s)	inside rSNPs	diseases
2	nsv898430	chr11:121979678-122056327	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	546 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121962800-121992400	Weak transcription	A549	lung
2	chr11:121972800-121985400	Weak transcription	Left Ventricle	heart
3	chr11:121976200-121986200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:121976400-121986600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:121976800-121992200	Weak transcription	Fetal Brain Female	brain
6	chr11:121977200-121989400	Strong transcription	HMEC	breast
7	chr11:121977400-121997000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:121977400-122002600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:121978800-121987400	Strong transcription	HSMM	muscle
10	chr11:121979600-121986800	Weak transcription	Placenta	Placenta
11	chr11:121979800-121993400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:121980000-121985400	Weak transcription	Psoas Muscle	Psoas
13	chr11:121980000-121985800	Weak transcription	Brain Angular Gyrus	brain
14	chr11:121980000-121986200	Weak transcription	Aorta	Aorta
15	chr11:121980000-122007400	Weak transcription	Ovary	ovary
16	chr11:121980200-121986200	Weak transcription	Fetal Heart	heart
17	chr11:121981000-121989400	Strong transcription	HUVEC	blood vessel
18	chr11:121981600-121991600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:121983000-121989200	Genic enhancers	Muscle Satellite Cultured Cells	--
20	chr11:121983200-121985400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:121983200-121986600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:121983200-121986800	Genic enhancers	NHDF-Ad	bronchial
23	chr11:121983800-121985400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:121983800-121987800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:121984000-121986200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:121984000-121988000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:121984200-121985400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:121984200-121997200	Strong transcription	NH-A	brain
29	chr11:121984400-121985400	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:121984400-121986400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:121984600-121987600	Strong transcription	HSMMtube	muscle
32	chr11:121984800-121985400	Transcr. at gene 5' and 3'	Osteobl	bone
33	chr11:121984800-121985600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:121984800-121985600	Enhancers	NHLF	lung
35	chr11:121984800-121986600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:121985000-121986200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:121985000-121986600	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:121985200-121985400	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr11:121985200-121985600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:121985200-121985600	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr11:121985200-121986400	Enhancers	Adipose Nuclei	Adipose
42	chr11:121985200-121986400	Weak transcription	NHEK	skin
43	chr11:121985200-121987800	Enhancers	Brain Cingulate Gyrus	brain
44	chr11:121985200-121988000	Enhancers	Brain Anterior Caudate	brain
45	chr11:121985200-121988200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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