Variant report

Variant	rs17128003
Chromosome Location	chr10:112562039-112562040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112534056..112536490-chr10:112560720..112563318,2	MCF-7	breast:
2	chr10:112561819..112564903-chr10:112677078..112679804,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214413	Chromatin interaction
ENSG00000108061	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11195369	1.00[AMR][1000 genomes]
rs11195395	1.00[AMR][1000 genomes]
rs60268746	1.00[EUR][1000 genomes]
rs7096332	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112540800-112562400	Weak transcription	Gastric	stomach
2	chr10:112546600-112562400	Weak transcription	Esophagus	oesophagus
3	chr10:112546600-112563800	Weak transcription	Lung	lung
4	chr10:112555200-112562200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:112555200-112562400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:112555800-112563800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:112555800-112563800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:112557400-112563600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:112557600-112563800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:112558000-112570200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
12	chr10:112559400-112562200	Weak transcription	HSMM	muscle
13	chr10:112559400-112567200	Weak transcription	Right Ventricle	heart
14	chr10:112560200-112562200	Weak transcription	Left Ventricle	heart
15	chr10:112560200-112562800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:112560200-112563800	Weak transcription	K562	blood
17	chr10:112560200-112564000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:112560800-112562200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:112560800-112562200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:112560800-112562800	Enhancers	Fetal Heart	heart
21	chr10:112561600-112562200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:112561600-112562200	Enhancers	GM12878-XiMat	blood
23	chr10:112561600-112562200	Enhancers	Osteobl	bone
24	chr10:112561600-112564000	Enhancers	Hela-S3	cervix
25	chr10:112561600-112564400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:112561600-112564400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:112561600-112564400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr10:112561600-112564400	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:112561600-112565600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr10:112561800-112562200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:112561800-112562200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:112561800-112562200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr10:112561800-112562400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:112561800-112562400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:112561800-112562400	Enhancers	Brain Hippocampus Middle	brain
36	chr10:112561800-112562400	Enhancers	Brain Substantia Nigra	brain
37	chr10:112561800-112562800	Enhancers	Fetal Lung	lung
38	chr10:112561800-112563000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:112561800-112563200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr10:112561800-112563400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:112561800-112563400	Enhancers	Fetal Kidney	kidney
42	chr10:112561800-112563800	Enhancers	Primary T cells from cord blood	blood
43	chr10:112561800-112563800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:112561800-112564000	Enhancers	NHDF-Ad	bronchial
45	chr10:112561800-112564200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:112561800-112564200	Enhancers	Adipose Nuclei	Adipose
47	chr10:112561800-112564200	Enhancers	Brain Anterior Caudate	brain
48	chr10:112561800-112564200	Enhancers	Brain Cingulate Gyrus	brain
49	chr10:112561800-112564200	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr10:112561800-112564200	Enhancers	Pancreatic Islets	Pancreatic Islet

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