Variant report

Variant	rs17128310
Chromosome Location	chr10:91620673-91620674
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1924715	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91607000-91621600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:91613800-91620800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:91620000-91621000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:91620200-91620800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:91620200-91620800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:91620200-91620800	Active TSS	Duodenum Mucosa	Duodenum
7	chr10:91620200-91620800	Active TSS	GM12878-XiMat	blood
8	chr10:91620200-91620800	Active TSS	Monocytes-CD14+_RO01746	blood
9	chr10:91620200-91621000	Active TSS	Primary T cells fromperipheralblood	blood
10	chr10:91620200-91621000	Active TSS	Liver	Liver
11	chr10:91620200-91621000	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr10:91620200-91621200	Flanking Active TSS	Dnd41	blood
13	chr10:91620200-91622000	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:91620400-91620800	Active TSS	Primary monocytes fromperipheralblood	blood
15	chr10:91620400-91620800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:91620400-91620800	Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr10:91620400-91620800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr10:91620400-91620800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:91620400-91620800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr10:91620400-91620800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:91620400-91620800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:91620400-91620800	Active TSS	Brain Anterior Caudate	brain
23	chr10:91620400-91620800	Active TSS	Brain Cingulate Gyrus	brain
24	chr10:91620400-91620800	Active TSS	Brain Hippocampus Middle	brain
25	chr10:91620400-91620800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr10:91620400-91620800	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr10:91620400-91620800	Active TSS	Right Atrium	heart
28	chr10:91620400-91620800	Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr10:91620400-91620800	Active TSS	Stomach Mucosa	stomach
30	chr10:91620400-91620800	Active TSS	A549	lung
31	chr10:91620400-91620800	Active TSS	NHDF-Ad	bronchial
32	chr10:91620400-91620800	Active TSS	NHLF	lung
33	chr10:91620400-91621000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:91620400-91621000	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr10:91620400-91621000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:91620400-91621000	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr10:91620400-91621000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:91620400-91621000	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr10:91620400-91621000	Active TSS	Fetal Thymus	thymus
40	chr10:91620400-91621000	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr10:91620400-91621000	Active TSS	Rectal Smooth Muscle	rectum
42	chr10:91620400-91621000	Active TSS	Stomach Smooth Muscle	stomach
43	chr10:91620400-91621000	Active TSS	HUVEC	blood vessel
44	chr10:91620400-91621000	Flanking Active TSS	NHEK	skin
45	chr10:91620400-91621200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:91620400-91621600	Flanking Active TSS	Osteobl	bone
47	chr10:91620400-91622200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:91620400-91622400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr10:91620600-91620800	Active TSS	Primary B cells from cord blood	blood
50	chr10:91620600-91620800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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