Variant report

Variant	rs17128458
Chromosome Location	chr10:112895860-112895861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10509932	1.00[CEU][hapmap]
rs10749056	1.00[CEU][hapmap]
rs11195438	0.95[ASN][1000 genomes]
rs17128194	1.00[CEU][hapmap]
rs17128446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17188020	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773931	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774055	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918615	1.00[CEU][hapmap]
rs884741	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112889800-112897400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:112891200-112896200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:112891200-112896400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:112891400-112896200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:112891400-112896200	Weak transcription	Pancreas	Pancrea
6	chr10:112891400-112896800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:112891600-112896200	Weak transcription	Stomach Mucosa	stomach
8	chr10:112895200-112898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:112895200-112899400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:112895800-112896200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:112895800-112896400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:112895800-112896600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:112895800-112898400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:112895800-112898600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:112895800-112899200	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links