Variant report

Variant	rs17128568
Chromosome Location	chr12:41041216-41041217
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1596509	1.00[JPT][hapmap]
rs1596539	1.00[JPT][hapmap]
rs17120936	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs17128561	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17128643	1.00[AMR][1000 genomes]
rs17128670	1.00[AMR][1000 genomes]
rs17128676	1.00[AMR][1000 genomes]
rs17128725	1.00[AMR][1000 genomes]
rs17128729	1.00[AMR][1000 genomes]
rs17128740	1.00[AMR][1000 genomes]
rs17128744	1.00[AMR][1000 genomes]
rs6581931	1.00[JPT][hapmap]
rs7301307	1.00[JPT][hapmap]
rs935230	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41037000-41041800	Enhancers	Fetal Lung	lung
2	chr12:41040600-41042000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:41040800-41041800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr12:41040800-41042800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:41040800-41044000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:41040800-41044400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:41041000-41041600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:41041000-41042000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:41041000-41043600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr12:41041200-41041800	Enhancers	NHEK	skin
11	chr12:41041200-41042000	Flanking Active TSS	A549	lung
12	chr12:41041200-41042600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links