Variant report

Variant	rs17128665
Chromosome Location	chr8:19432198-19432199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10503652	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs12114430	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs12114584	0.87[AMR][1000 genomes]
rs17128565	0.95[CEU][hapmap];0.92[CHB][hapmap];0.89[AMR][1000 genomes]
rs17128631	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2958554	0.89[CEU][hapmap];0.89[AMR][1000 genomes]
rs2958556	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs2958569	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2958590	0.95[CEU][hapmap]
rs2958593	0.95[CEU][hapmap];0.92[CHB][hapmap]
rs2958595	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes]
rs2975434	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2975468	0.95[CEU][hapmap]
rs2975485	0.84[CHB][hapmap]
rs2975494	0.95[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.80[TSI][hapmap]
rs4418356	0.95[CEU][hapmap]
rs4921658	0.95[CEU][hapmap]
rs4922053	0.95[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.91[AMR][1000 genomes]
rs4922055	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap]
rs62493884	0.81[AMR][1000 genomes]
rs62493885	0.92[AMR][1000 genomes]
rs62493886	0.92[AMR][1000 genomes]
rs62493887	0.81[AMR][1000 genomes]
rs62493891	0.81[AMR][1000 genomes]
rs62493893	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62493894	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62493895	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62494464	1.00[ASN][1000 genomes]
rs6992386	0.95[CEU][hapmap]
rs6992516	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7009836	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533109	chr8:18845845-19456780	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv34007	chr8:19252602-19482098	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv890624	chr8:19319061-19456270	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv610753	chr8:19364883-19439977	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv1018057	chr8:19370830-19435399	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016276	chr8:19374998-19435147	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv890626	chr8:19383697-19483259	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv890627	chr8:19389865-19561997	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv610754	chr8:19419494-19525294	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19379400-19434200	Weak transcription	Placenta	Placenta
2	chr8:19401400-19434000	Weak transcription	Hela-S3	cervix
3	chr8:19409000-19437400	Weak transcription	Gastric	stomach
4	chr8:19419200-19433400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:19419600-19433400	Weak transcription	Left Ventricle	heart
6	chr8:19419600-19435600	Weak transcription	Pancreas	Pancrea
7	chr8:19422200-19435600	Weak transcription	Right Atrium	heart
8	chr8:19422600-19442000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:19424600-19435400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:19427800-19436200	Weak transcription	Spleen	Spleen
11	chr8:19428400-19436000	Weak transcription	Right Ventricle	heart
12	chr8:19429800-19432800	Weak transcription	Primary B cells from cord blood	blood
13	chr8:19429800-19437000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:19430800-19438400	Weak transcription	Brain Anterior Caudate	brain
15	chr8:19431000-19432600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:19431200-19433400	Weak transcription	Fetal Thymus	thymus
17	chr8:19431200-19433400	Weak transcription	Thymus	Thymus
18	chr8:19431400-19433400	Weak transcription	Primary T cells from cord blood	blood
19	chr8:19431400-19436400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:19431600-19432200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:19431600-19432200	Genic enhancers	A549	lung
22	chr8:19431600-19433200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr8:19432000-19432200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:19432000-19432200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr8:19432000-19432200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr8:19432000-19432200	Enhancers	Lung	lung
27	chr8:19432000-19437400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links