Variant report

Variant	rs17128790
Chromosome Location	chr14:56225962-56225963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:56224023..56226441-chr14:56261049..56262918,2	MCF-7	breast:
2	chr14:56219849..56221518-chr14:56225046..56227362,2	MCF-7	breast:
3	chr14:56220561..56223458-chr14:56223829..56226647,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10137782	0.88[AMR][1000 genomes]
rs10150228	0.88[AMR][1000 genomes]
rs17128802	0.85[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17128804	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2342591	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58698215	0.88[AMR][1000 genomes]
rs60409861	0.85[AMR][1000 genomes]
rs72622467	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72622468	0.95[AMR][1000 genomes]
rs72622469	0.95[AMR][1000 genomes]
rs72622470	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72622471	0.91[AMR][1000 genomes]
rs72622472	0.88[AMR][1000 genomes]
rs7494275	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv901967	chr14:56183127-56252062	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv901968	chr14:56183127-56256651	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv901969	chr14:56183127-56258997	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv901970	chr14:56183127-56265176	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv901971	chr14:56183127-56265176	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv901972	chr14:56185501-56256651	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv901973	chr14:56185908-56252062	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv901974	chr14:56192577-56252062	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv901975	chr14:56192577-56260033	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv901976	chr14:56192577-56265176	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56221600-56228400	Weak transcription	Aorta	Aorta
2	chr14:56222600-56226200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:56223400-56246000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:56223600-56228200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:56223600-56229200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:56223600-56229400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:56223600-56229400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:56224200-56226200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr14:56224400-56226000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:56224400-56226200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:56224400-56226800	Enhancers	Fetal Intestine Small	intestine
12	chr14:56224600-56226000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr14:56224600-56226800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:56224600-56227000	Enhancers	Fetal Intestine Large	intestine
15	chr14:56224800-56229400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:56225000-56226200	Enhancers	Brain Germinal Matrix	brain
17	chr14:56225000-56226400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr14:56225200-56226000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr14:56225600-56226000	Enhancers	Fetal Lung	lung
20	chr14:56225600-56226200	Enhancers	Thymus	Thymus
21	chr14:56225600-56226200	Enhancers	A549	lung
22	chr14:56225600-56226200	Enhancers	HepG2	liver
23	chr14:56225600-56229400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:56225800-56227200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:56225800-56229200	Weak transcription	Fetal Thymus	thymus

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