Variant report

Variant	rs17129290
Chromosome Location	chr12:41758252-41758253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12099541	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17121146	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17129370	1.00[YRI][hapmap]
rs17129419	1.00[CEU][hapmap]
rs17129467	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41755000-41759600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:41755400-41760200	Enhancers	Brain Germinal Matrix	brain
3	chr12:41756600-41758400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:41756800-41758600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:41757000-41758600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:41757000-41759600	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:41757400-41759600	Weak transcription	Fetal Kidney	kidney
8	chr12:41757800-41759800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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