Variant report

Variant	rs17129438
Chromosome Location	chr10:91713644-91713645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10736051	0.95[ASN][1000 genomes]
rs10748530	0.84[ASN][1000 genomes]
rs10748531	0.82[ASN][1000 genomes]
rs10785922	0.95[ASN][1000 genomes]
rs10881712	0.92[ASN][1000 genomes]
rs11594283	0.88[ASN][1000 genomes]
rs12258006	0.90[ASN][1000 genomes]
rs1274130	0.84[ASN][1000 genomes]
rs1274133	0.93[ASN][1000 genomes]
rs1274134	0.93[ASN][1000 genomes]
rs1324698	0.83[ASN][1000 genomes]
rs1343367	0.90[ASN][1000 genomes]
rs1419112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1475274	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17129462	0.84[ASN][1000 genomes]
rs17129585	0.82[AFR][1000 genomes]
rs17411458	0.86[AFR][1000 genomes]
rs17412226	0.90[AFR][1000 genomes]
rs1936216	0.97[ASN][1000 genomes]
rs1936217	0.81[ASN][1000 genomes]
rs1936218	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1936219	0.84[ASN][1000 genomes]
rs1936220	1.00[ASN][1000 genomes]
rs1936221	0.92[ASN][1000 genomes]
rs1954411	0.84[ASN][1000 genomes]
rs2000285	0.81[ASN][1000 genomes]
rs2211499	0.81[ASN][1000 genomes]
rs2798612	0.97[ASN][1000 genomes]
rs28658287	0.84[ASN][1000 genomes]
rs28719637	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4145043	0.95[ASN][1000 genomes]
rs56887221	0.84[ASN][1000 genomes]
rs57308670	0.92[AFR][1000 genomes]
rs59451110	0.90[AFR][1000 genomes]
rs7070420	0.90[ASN][1000 genomes]
rs7089181	0.81[ASN][1000 genomes]
rs7089587	0.95[ASN][1000 genomes]
rs73375689	0.81[ASN][1000 genomes]
rs73377303	0.82[ASN][1000 genomes]
rs7912852	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1048021	chr10:91703053-91748404	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv551876	chr10:91704474-91735093	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91712000-91713800	Weak transcription	Fetal Stomach	stomach
2	chr10:91712400-91714200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:91713600-91714200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:91713600-91714200	Enhancers	Fetal Brain Female	brain
5	chr10:91713600-91714400	Enhancers	Fetal Brain Male	brain

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