Variant report

Variant	rs17129440
Chromosome Location	chr12:41917096-41917097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17121146	0.86[EUR][1000 genomes]
rs17129419	0.93[EUR][1000 genomes]
rs17129467	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41914000-41917200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:41914600-41917400	Enhancers	HSMM	muscle
3	chr12:41915400-41917200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:41916000-41921200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:41916000-41927400	Weak transcription	Aorta	Aorta
6	chr12:41916200-41922000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:41916400-41917400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:41916400-41918200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:41916400-41921400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:41916400-41924600	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:41916400-41925200	Weak transcription	Brain Anterior Caudate	brain
12	chr12:41916600-41917200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:41916600-41917400	Enhancers	HUVEC	blood vessel
14	chr12:41916600-41920600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:41916800-41917200	Weak transcription	HSMMtube	muscle
16	chr12:41916800-41917400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links