Variant report

Variant	rs17130840
Chromosome Location	chr1:69440840-69440841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10789271	1.00[EUR][1000 genomes]
rs12061459	1.00[EUR][1000 genomes]
rs12091077	1.00[EUR][1000 genomes]
rs12096537	1.00[EUR][1000 genomes]
rs1352894	1.00[EUR][1000 genomes]
rs17130841	1.00[EUR][1000 genomes]
rs7547421	1.00[EUR][1000 genomes]
rs7554552	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870641	chr1:69338706-69446281	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69435600-69441400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:69435800-69441400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:69435800-69442600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:69436200-69441000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:69436200-69441200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:69436400-69441000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:69436600-69441200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:69436600-69441200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:69438200-69444000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:69439200-69444200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:69440000-69443800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:69440200-69441200	Weak transcription	NH-A	brain
13	chr1:69440400-69441200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:69440400-69441200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:69440400-69441200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:69440400-69441400	Enhancers	Fetal Stomach	stomach
17	chr1:69440400-69441800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:69440400-69442200	Enhancers	Colon Smooth Muscle	Colon
19	chr1:69440400-69442200	Enhancers	Fetal Brain Female	brain
20	chr1:69440400-69442200	Enhancers	Rectal Smooth Muscle	rectum
21	chr1:69440400-69442600	Enhancers	Fetal Brain Male	brain
22	chr1:69440600-69441000	Weak transcription	HMEC	breast
23	chr1:69440800-69443800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:69440800-69444000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:69440800-69444000	Enhancers	HUES64 Cell Line	embryonic stem cell

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