Variant report

Variant	rs17131056
Chromosome Location	chr1:70328030-70328031
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1417442	1.00[AMR][1000 genomes]
rs1417445	1.00[AMR][1000 genomes]
rs59312430	1.00[AMR][1000 genomes]
rs74087763	1.00[AMR][1000 genomes]
rs74087768	1.00[AMR][1000 genomes]
rs7521495	1.00[AMR][1000 genomes]
rs7532489	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70324800-70328400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:70325200-70328600	Weak transcription	HUVEC	blood vessel
3	chr1:70327400-70328600	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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