The 2.0 version of rSNPBase

Variant report

Variant rs17131550
Chromosome Location chr1:92220155-92220156
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92197600-92230000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr1:92198200-92224400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:92204800-92247000 Weak transcription Primary T helper cells fromperipheralblood blood
4 chr1:92208400-92235800 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:92211800-92235600 Weak transcription Fetal Kidney kidney
6 chr1:92213000-92224000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr1:92213800-92235000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:92214400-92221600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:92214800-92220200 Enhancers Breast Myoepithelial Primary Cells Breast
10 chr1:92215200-92232400 Weak transcription A549 lung
11 chr1:92215800-92221000 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:92216400-92223400 Weak transcription Spleen Spleen
13 chr1:92216800-92223800 Weak transcription Right Atrium heart
14 chr1:92216800-92241800 Weak transcription Aorta Aorta
15 chr1:92217000-92223400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:92217000-92223400 Weak transcription Lung lung
17 chr1:92217000-92226200 Weak transcription Fetal Brain Male brain
18 chr1:92217200-92220200 Weak transcription Left Ventricle heart
19 chr1:92217200-92220400 Weak transcription Psoas Muscle Psoas
20 chr1:92217200-92220600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr1:92217200-92230200 Weak transcription Pancreas Pancrea
22 chr1:92217400-92232400 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:92217600-92220800 Enhancers Primary T helper 17 cells PMA-I stimulated --
24 chr1:92217600-92221000 Enhancers Primary T helper cells PMA-I stimulated --
25 chr1:92217600-92221000 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr1:92217600-92223400 Weak transcription HSMMtube muscle
27 chr1:92217600-92230200 Weak transcription Hela-S3 cervix
28 chr1:92217800-92220200 Weak transcription Fetal Lung lung
29 chr1:92217800-92225000 Weak transcription Brain Angular Gyrus brain
30 chr1:92217800-92247800 Weak transcription Small Intestine intestine
31 chr1:92218000-92221000 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr1:92218000-92223000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:92218000-92223000 Weak transcription Liver Liver
34 chr1:92218000-92224600 Weak transcription Brain Anterior Caudate brain
35 chr1:92218200-92220400 Enhancers GM12878-XiMat blood
36 chr1:92218200-92223800 Weak transcription Right Ventricle heart
37 chr1:92218200-92224000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr1:92218200-92225000 Strong transcription HepG2 liver
39 chr1:92218600-92221000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
40 chr1:92218800-92223800 Weak transcription Fetal Muscle Trunk muscle
41 chr1:92219000-92220600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
42 chr1:92219000-92226600 Genic enhancers NHDF-Ad bronchial
43 chr1:92219200-92222800 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr1:92219200-92224200 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr1:92219400-92220200 Strong transcription Adipose Nuclei Adipose
46 chr1:92219400-92220400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr1:92219400-92220400 Enhancers Muscle Satellite Cultured Cells --
48 chr1:92219400-92220600 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr1:92219400-92220600 Enhancers Stomach Smooth Muscle stomach
50 chr1:92219400-92221000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015