Variant report

Variant	rs17132172
Chromosome Location	chr10:4173322-4173323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3826628..3829205-chr10:4172781..4176385,4	MCF-7	breast:
2	chr10:4170399..4173353-chr10:4195678..4198644,2	K562	blood:
3	chr10:3827534..3829286-chr10:4172120..4173887,2	MCF-7	breast:
4	chr10:3817511..3819980-chr10:4171499..4173614,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11819294	0.87[ASN][1000 genomes]
rs17132117	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17132150	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17132162	1.00[ASN][1000 genomes]
rs17132167	1.00[CHB][hapmap]
rs7090739	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407901	chr10:4172452-4176750	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4163000-4173400	Weak transcription	NHLF	lung
2	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
3	chr10:4169400-4173400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:4170800-4174400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:4171000-4173800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:4171400-4173800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:4171400-4174800	Enhancers	Hela-S3	cervix
9	chr10:4171600-4173400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:4171800-4173400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:4171800-4174800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:4172000-4173600	Enhancers	Stomach Mucosa	stomach
13	chr10:4172000-4173600	Enhancers	NH-A	brain
14	chr10:4172000-4175000	Enhancers	Osteobl	bone
15	chr10:4172200-4173600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr10:4172200-4173600	Enhancers	Fetal Muscle Leg	muscle
17	chr10:4172200-4175200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:4172200-4175200	Enhancers	Fetal Thymus	thymus
19	chr10:4172400-4173400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:4172400-4174200	Enhancers	Adipose Nuclei	Adipose
21	chr10:4172400-4174400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:4172600-4173400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:4172600-4173400	Weak transcription	Brain Anterior Caudate	brain
24	chr10:4172600-4173800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr10:4172600-4173800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr10:4172600-4174000	Enhancers	HMEC	breast
27	chr10:4172600-4174200	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr10:4172600-4174800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:4172600-4175200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:4172800-4173400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:4172800-4173400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr10:4172800-4173800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr10:4172800-4173800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:4172800-4173800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:4172800-4173800	Flanking Active TSS	Dnd41	blood
36	chr10:4172800-4174200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:4172800-4174200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:4172800-4174200	Weak transcription	Left Ventricle	heart
39	chr10:4172800-4174200	Weak transcription	Lung	lung
40	chr10:4172800-4174400	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr10:4172800-4174400	Weak transcription	Placenta	Placenta
42	chr10:4172800-4174400	Enhancers	Thymus	Thymus
43	chr10:4172800-4174400	Flanking Active TSS	HUVEC	blood vessel
44	chr10:4172800-4174600	Enhancers	Fetal Stomach	stomach
45	chr10:4172800-4174800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:4172800-4175200	Enhancers	Small Intestine	intestine
47	chr10:4172800-4175200	Enhancers	HSMM	muscle
48	chr10:4173000-4173400	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr10:4173000-4173600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:4173000-4173600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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