Variant report

Variant	rs17132427
Chromosome Location	chr10:4283076-4283077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4278158..4281099-chr10:4281519..4283245,2	MCF-7	breast:
2	chr10:3826852..3829310-chr10:4280995..4283154,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLF6-6	chr10:4282814-4283144	XLOC_008701

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17132343	1.00[AMR][1000 genomes]
rs17132367	1.00[AMR][1000 genomes]
rs17132371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044535	chr10:4271872-4306421	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1051538	chr10:4274395-4291004	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1053322	chr10:4279301-4306798	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4272400-4283200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:4276000-4292200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4276600-4284000	Weak transcription	Left Ventricle	heart
4	chr10:4279200-4283200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:4280600-4283200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:4282000-4283600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:4282000-4286200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:4282200-4286400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:4282400-4283200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr10:4282400-4283600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:4282400-4283600	Enhancers	HUVEC	blood vessel
12	chr10:4282400-4284200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:4282400-4285000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:4282600-4284000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:4282600-4284000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:4282800-4283200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:4282800-4283200	Enhancers	HMEC	breast
18	chr10:4282800-4283400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:4282800-4283400	Enhancers	HSMMtube	muscle
20	chr10:4282800-4283600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:4282800-4283600	Enhancers	Adipose Nuclei	Adipose
22	chr10:4282800-4283600	Enhancers	Psoas Muscle	Psoas
23	chr10:4282800-4283600	Enhancers	Dnd41	blood
24	chr10:4282800-4283600	Enhancers	HSMM	muscle
25	chr10:4282800-4283800	Enhancers	Colon Smooth Muscle	Colon
26	chr10:4282800-4283800	Flanking Active TSS	NHDF-Ad	bronchial
27	chr10:4282800-4284000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:4282800-4284000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr10:4282800-4284000	Enhancers	Fetal Kidney	kidney
30	chr10:4282800-4284000	Flanking Active TSS	NHLF	lung
31	chr10:4282800-4284000	Flanking Active TSS	Osteobl	bone
32	chr10:4282800-4284800	Active TSS	Right Atrium	heart
33	chr10:4282800-4285000	Enhancers	H9 Cell Line	embryonic stem cell
34	chr10:4282800-4285000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr10:4282800-4285200	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:4282800-4285200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr10:4282800-4285600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr10:4282800-4285600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr10:4282800-4285600	Enhancers	Fetal Muscle Leg	muscle
40	chr10:4282800-4285800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:4282800-4286000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr10:4282800-4286000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:4282800-4286600	Active TSS	Stomach Smooth Muscle	stomach
44	chr10:4282800-4287200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:4283000-4283400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:4283000-4283400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr10:4283000-4283400	Enhancers	NH-A	brain
48	chr10:4283000-4284000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:4283000-4284000	Enhancers	NHEK	skin
50	chr10:4283000-4284200	Active TSS	Skeletal Muscle Female	skeletal muscle

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