Variant report

Variant	rs17133608
Chromosome Location	chr11:74723676-74723677
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74721191..74723681-chr11:74738693..74740282,2	K562	blood:
2	chr11:74720689..74723993-chr11:74726887..74730730,4	K562	blood:
3	chr11:74697161..74701589-chr11:74722600..74726344,4	K562	blood:
4	chr11:74718195..74720247-chr11:74720638..74725199,4	K562	blood:
5	chr11:74663493..74665057-chr11:74721622..74724251,2	K562	blood:
6	chr11:74723507..74725888-chr11:74813976..74816359,2	K562	blood:

Variant related genes	Relation type
ENSG00000162139	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11604806	0.92[TSI][hapmap]
rs17245026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4944967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74700600-74725000	Weak transcription	HSMMtube	muscle
2	chr11:74701000-74723800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:74712000-74728200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:74714200-74725400	Strong transcription	Dnd41	blood
5	chr11:74714800-74725000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:74715000-74724000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:74715400-74723800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:74715600-74725400	Strong transcription	Liver	Liver
9	chr11:74716200-74724000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:74716200-74724000	Strong transcription	GM12878-XiMat	blood
11	chr11:74716200-74725600	Strong transcription	Primary T cells from cord blood	blood
12	chr11:74716400-74723800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:74716400-74724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:74716400-74724200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:74716400-74725600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:74716400-74725600	Strong transcription	Thymus	Thymus
17	chr11:74717400-74724400	Strong transcription	Fetal Thymus	thymus
18	chr11:74717600-74725400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:74717600-74726000	Weak transcription	Esophagus	oesophagus
20	chr11:74718000-74723800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:74718000-74724000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:74718000-74724400	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:74718000-74733800	Weak transcription	Brain Substantia Nigra	brain
24	chr11:74718000-74734200	Weak transcription	Right Ventricle	heart
25	chr11:74718200-74726200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:74718200-74726200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:74718200-74729200	Weak transcription	Gastric	stomach
28	chr11:74718400-74726200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:74718400-74729800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:74718600-74724000	Weak transcription	NHDF-Ad	bronchial
31	chr11:74718600-74725800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:74718800-74724400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:74718800-74726600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:74719000-74725000	Weak transcription	HMEC	breast
35	chr11:74719200-74725000	Weak transcription	Hela-S3	cervix
36	chr11:74719400-74724000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:74719400-74728600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:74719800-74724000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:74720000-74724000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr11:74720400-74725400	Weak transcription	NH-A	brain
41	chr11:74721000-74724000	Weak transcription	Osteobl	bone
42	chr11:74721000-74724400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:74721000-74724400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:74721000-74724400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr11:74721000-74726200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:74721200-74723800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:74721200-74724400	Weak transcription	NHLF	lung
48	chr11:74721200-74725000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:74721200-74725000	Weak transcription	NHEK	skin
50	chr11:74721400-74723800	Weak transcription	Brain Germinal Matrix	brain

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