Variant report

Variant	rs17133917
Chromosome Location	chr7:50709650-50709651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50708086..50709810-chr7:50716602..50718268,2	K562	blood:
2	chr7:50699706..50701584-chr7:50708525..50710076,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IKZF1-8	chr7:50709334-50709692	NONHSAT120566

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10464788	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237448	0.93[AFR][1000 genomes]
rs2244351	0.82[CHB][hapmap]
rs2244353	0.82[CHB][hapmap]
rs2244372	0.82[CHB][hapmap]
rs2244480	0.82[CHB][hapmap]
rs2282926	0.81[AFR][1000 genomes]
rs2529410	0.90[CHB][hapmap]
rs2876869	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3819428	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7806555	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs886822	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1015758	chr7:50565404-50768153	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1023228	chr7:50573214-50777634	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1032882	chr7:50611138-50775257	Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538834	chr7:50611138-50775257	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1031138	chr7:50651793-50814881	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17133917	GRB10	cis	cerebellum	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50674200-50709800	Weak transcription	Esophagus	oesophagus
2	chr7:50694200-50729200	Weak transcription	Hela-S3	cervix
3	chr7:50695000-50720600	Weak transcription	Primary T cells from cord blood	blood
4	chr7:50695600-50716000	Weak transcription	Fetal Stomach	stomach
5	chr7:50697600-50716600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:50697800-50716800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:50699600-50720400	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:50700600-50722000	Weak transcription	Aorta	Aorta
9	chr7:50701000-50712400	Weak transcription	Ovary	ovary
10	chr7:50701000-50719400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:50701000-50720400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:50701000-50733600	Weak transcription	A549	lung
13	chr7:50701200-50717800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:50701200-50728800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:50701200-50731200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:50701200-50733600	Weak transcription	K562	blood
17	chr7:50701400-50716400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:50701400-50729000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:50704800-50711600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:50705000-50713000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:50705800-50724200	Weak transcription	NH-A	brain
22	chr7:50706000-50711400	Weak transcription	HUVEC	blood vessel
23	chr7:50706000-50717200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:50706400-50720400	Weak transcription	NHDF-Ad	bronchial
25	chr7:50706400-50744000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr7:50706600-50719200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:50706800-50724600	Weak transcription	Fetal Lung	lung
28	chr7:50707200-50748600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:50707800-50709800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:50707800-50710000	Enhancers	Left Ventricle	heart
31	chr7:50707800-50710000	Enhancers	Psoas Muscle	Psoas
32	chr7:50707800-50710000	Enhancers	Right Atrium	heart
33	chr7:50707800-50727600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:50708000-50709800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr7:50708000-50712600	Genic enhancers	Pancreas	Pancrea
36	chr7:50708200-50729400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:50708400-50710200	Enhancers	Fetal Heart	heart
38	chr7:50708400-50710600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:50708400-50712400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:50708600-50710000	Enhancers	Spleen	Spleen
41	chr7:50708600-50710200	Enhancers	Right Ventricle	heart
42	chr7:50708600-50715200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:50708800-50710000	Enhancers	HSMMtube	muscle
44	chr7:50708800-50711600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:50709000-50710000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:50709000-50710000	Enhancers	Lung	lung
47	chr7:50709200-50709800	Enhancers	Fetal Muscle Leg	muscle
48	chr7:50709200-50710000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:50709200-50710000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:50709200-50710200	Active TSS	Brain Angular Gyrus	brain

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