Variant report

Variant	rs17134159
Chromosome Location	chr11:75314594-75314595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:75314576-75315804	SK-N-SH	brain:	n/a	n/a
2	PBX3	chr11:75314585-75315781	SK-N-SH	brain:	n/a	n/a
3	PBX3	chr11:75314591-75315645	SK-N-SH	brain:	n/a	n/a
4	STAT3	chr11:75314427-75315804	MCF10A-Er-Src	breast:	n/a	n/a
5	TCF12	chr11:75313877-75315975	SK-N-SH	brain:	n/a	n/a
6	STAT3	chr11:75314427-75315818	MCF10A-Er-Src	breast:	n/a	n/a
7	EP300	chr11:75314550-75315930	SK-N-SH	brain:	n/a	n/a
8	FOS	chr11:75314405-75315862	MCF10A-Er-Src	breast:	n/a	chr11:75315100-75315111
9	NFIC	chr11:75314519-75315851	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:75303810..75306638-chr11:75313852..75316089,2	MCF-7	breast:
2	chr11:75110440..75111997-chr11:75313123..75315557,2	MCF-7	breast:
3	chr11:75314295..75316216-chr11:75317746..75319793,2	K562	blood:
4	chr11:75307063..75310368-chr11:75311136..75315425,4	K562	blood:
5	chr11:75301166..75302882-chr11:75313471..75315266,2	K562	blood:

Variant related genes	Relation type
MAP6	TF binding region
ENSG00000206941	Chromatin interaction
ENSG00000255434	Chromatin interaction
ENSG00000171533	Chromatin interaction
ENSG00000149273	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17133983	1.00[MEX][hapmap]
rs17134160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7105575	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7933166	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75296600-75321000	Weak transcription	Ovary	ovary
4	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
5	chr11:75305600-75316000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:75305800-75316000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:75306000-75326200	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:75306000-75326200	Weak transcription	Brain Substantia Nigra	brain
10	chr11:75306400-75323600	Weak transcription	Spleen	Spleen
11	chr11:75306600-75324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:75307000-75316000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:75309200-75316600	Weak transcription	Brain Germinal Matrix	brain
14	chr11:75309200-75320800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:75309600-75319400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:75309800-75320200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:75310200-75329800	Weak transcription	Fetal Intestine Small	intestine
18	chr11:75310800-75316000	Weak transcription	Fetal Intestine Large	intestine
19	chr11:75311600-75324000	Weak transcription	Right Atrium	heart
20	chr11:75312600-75319600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:75313400-75314800	Enhancers	Fetal Muscle Trunk	muscle
22	chr11:75313400-75316200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:75313600-75315200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:75313600-75315600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:75313800-75315000	Enhancers	HUVEC	blood vessel
26	chr11:75313800-75315000	Enhancers	NH-A	brain
27	chr11:75313800-75315200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:75313800-75315400	Enhancers	Fetal Lung	lung
29	chr11:75313800-75315600	Enhancers	HMEC	breast
30	chr11:75313800-75315600	Enhancers	NHEK	skin
31	chr11:75313800-75316200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr11:75313800-75316400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:75313800-75326000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:75314000-75314600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:75314000-75314600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:75314000-75314600	Enhancers	HSMMtube	muscle
37	chr11:75314000-75314800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:75314000-75315000	Enhancers	Fetal Stomach	stomach
39	chr11:75314000-75315200	Enhancers	NHDF-Ad	bronchial
40	chr11:75314000-75315400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:75314000-75315400	Genic enhancers	Fetal Brain Female	brain
42	chr11:75314000-75315400	Enhancers	Fetal Heart	heart
43	chr11:75314000-75315400	Enhancers	NHLF	lung
44	chr11:75314000-75315600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:75314000-75315600	Enhancers	HSMM	muscle
46	chr11:75314000-75315800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:75314000-75315800	Enhancers	Hela-S3	cervix
48	chr11:75314000-75316000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:75314000-75316000	Flanking Active TSS	Osteobl	bone
50	chr11:75314000-75328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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