Variant report

Variant	rs17134445
Chromosome Location	chr5:111720710-111720711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111718807..111721439-chr5:111722466..111724088,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6594606	1.00[AMR][1000 genomes]
rs6864294	1.00[AMR][1000 genomes]
rs6872339	1.00[AMR][1000 genomes]
rs6886398	1.00[AMR][1000 genomes]
rs73220326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv531291	chr5:111497440-111756788	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv882714	chr5:111655382-111807579	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111704400-111726000	Weak transcription	Lung	lung
2	chr5:111707400-111726000	Weak transcription	Pancreas	Pancrea
3	chr5:111708400-111725600	Weak transcription	Fetal Brain Male	brain
4	chr5:111709200-111725600	Weak transcription	Psoas Muscle	Psoas
5	chr5:111709200-111745400	Weak transcription	Esophagus	oesophagus
6	chr5:111715600-111721400	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:111715600-111723800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:111715800-111732200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:111716800-111723800	Weak transcription	Fetal Kidney	kidney
10	chr5:111717000-111732200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:111717400-111724200	Weak transcription	Gastric	stomach
12	chr5:111717600-111724200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:111717600-111735000	Weak transcription	Right Ventricle	heart
14	chr5:111719000-111723800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:111719600-111720800	Enhancers	Fetal Heart	heart
16	chr5:111720400-111742800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr5:111720600-111720800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:111720600-111720800	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr5:111720600-111720800	Enhancers	Spleen	Spleen
20	chr5:111720600-111721000	Enhancers	Left Ventricle	heart
21	chr5:111720600-111721000	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links