Variant report

Variant	rs17134733
Chromosome Location	chr10:5325363-5325364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5189042..5190566-chr10:5324451..5326870,2	MCF-7	breast:
2	chr10:5241329..5242148-chr10:5325053..5325709,2	MCF-7	breast:
3	chr10:5308367..5310948-chr10:5323905..5325582,2	K562	blood:
4	chr10:5082340..5083456-chr10:5325202..5326034,4	MCF-7	breast:
5	chr10:5131798..5132693-chr10:5325154..5326138,5	MCF-7	breast:
6	chr10:5024232..5024860-chr10:5325292..5325936,2	K562	blood:
7	chr10:4856147..4859117-chr10:5323721..5326556,2	K562	blood:
8	chr10:4891638..4892533-chr10:5325193..5326077,4	MCF-7	breast:
9	chr10:4891547..4892555-chr10:5325301..5326118,4	MCF-7	breast:

No data

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10508292	0.84[AMR][1000 genomes]
rs11253048	0.82[ASN][1000 genomes]
rs11594514	0.86[ASN][1000 genomes]
rs11598824	0.86[ASN][1000 genomes]
rs11815997	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12413267	0.96[ASN][1000 genomes]
rs12414309	0.82[ASN][1000 genomes]
rs12415198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415537	0.86[ASN][1000 genomes]
rs12763722	0.90[ASN][1000 genomes]
rs12766904	0.83[ASN][1000 genomes]
rs12768723	0.83[ASN][1000 genomes]
rs1574227	0.96[ASN][1000 genomes]
rs1574228	0.96[ASN][1000 genomes]
rs1574351	0.96[ASN][1000 genomes]
rs1574352	0.96[ASN][1000 genomes]
rs17134531	0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17134533	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17134585	0.82[ASN][1000 genomes]
rs17134588	0.82[ASN][1000 genomes]
rs17134589	0.82[ASN][1000 genomes]
rs17134592	0.82[ASN][1000 genomes]
rs17134601	0.82[ASN][1000 genomes]
rs17134604	0.82[ASN][1000 genomes]
rs17134607	0.82[ASN][1000 genomes]
rs17134608	0.82[ASN][1000 genomes]
rs17134610	0.82[ASN][1000 genomes]
rs17134616	0.82[ASN][1000 genomes]
rs17134617	0.82[ASN][1000 genomes]
rs17134724	0.96[ASN][1000 genomes]
rs17307911	0.96[ASN][1000 genomes]
rs17399127	0.96[ASN][1000 genomes]
rs17399232	0.96[ASN][1000 genomes]
rs17399725	0.81[ASN][1000 genomes]
rs17399774	0.81[ASN][1000 genomes]
rs1832007	0.82[ASN][1000 genomes]
rs1889459	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1889460	0.91[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1931679	0.82[ASN][1000 genomes]
rs2225694	0.86[ASN][1000 genomes]
rs2895072	0.86[ASN][1000 genomes]
rs34066814	0.86[ASN][1000 genomes]
rs34179396	0.86[ASN][1000 genomes]
rs34412239	0.86[ASN][1000 genomes]
rs34419312	0.86[ASN][1000 genomes]
rs3750567	0.82[ASN][1000 genomes]
rs3750568	0.82[ASN][1000 genomes]
rs3750569	0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3750571	0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs3750572	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3829125	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4242789	0.86[ASN][1000 genomes]
rs4339945	0.96[ASN][1000 genomes]
rs4424574	0.82[ASN][1000 genomes]
rs4434907	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4880722	0.86[ASN][1000 genomes]
rs4880723	0.86[ASN][1000 genomes]
rs4880724	0.86[ASN][1000 genomes]
rs4880725	0.86[ASN][1000 genomes]
rs4881422	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4881423	0.86[ASN][1000 genomes]
rs4881424	0.86[ASN][1000 genomes]
rs4881425	0.86[ASN][1000 genomes]
rs4881426	0.86[ASN][1000 genomes]
rs4881428	0.83[ASN][1000 genomes]
rs6601924	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6601927	0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6601940	0.86[ASN][1000 genomes]
rs67922847	0.86[ASN][1000 genomes]
rs7067818	0.86[ASN][1000 genomes]
rs7076044	0.86[ASN][1000 genomes]
rs7078211	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7081832	0.86[ASN][1000 genomes]
rs7081954	0.86[ASN][1000 genomes]
rs7082291	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7086209	0.86[ASN][1000 genomes]
rs7089935	0.86[ASN][1000 genomes]
rs7094236	0.86[ASN][1000 genomes]
rs7097673	0.86[ASN][1000 genomes]
rs7100158	0.86[ASN][1000 genomes]
rs7100167	0.86[ASN][1000 genomes]
rs7100466	0.86[ASN][1000 genomes]
rs72778430	0.86[ASN][1000 genomes]
rs7475279	0.82[ASN][1000 genomes]
rs7897431	0.82[ASN][1000 genomes]
rs7897822	0.85[ASN][1000 genomes]
rs7901496	0.86[ASN][1000 genomes]
rs7906894	0.83[ASN][1000 genomes]
rs7908297	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7911101	0.86[ASN][1000 genomes]
rs7912751	0.82[ASN][1000 genomes]
rs7919795	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7921838	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs869009	0.96[ASN][1000 genomes]
rs9423393	0.81[ASN][1000 genomes]
rs9423570	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv1039386	chr10:5008383-5348491	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv466715	chr10:5285597-5348491	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv466717	chr10:5285597-5348491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv549888	chr10:5285597-5348491	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv894795	chr10:5286600-5348491	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv894796	chr10:5300976-5348491	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5306400-5325600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:5306800-5325400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:5308600-5325400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:5314600-5325400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:5317600-5326200	Weak transcription	Dnd41	blood
6	chr10:5321800-5325800	Weak transcription	NHLF	lung
7	chr10:5324200-5326000	Enhancers	Esophagus	oesophagus
8	chr10:5324200-5326000	Enhancers	Stomach Mucosa	stomach
9	chr10:5324200-5326600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:5324200-5326800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:5324400-5325400	Weak transcription	NHEK	skin
12	chr10:5324400-5326000	Enhancers	HepG2	liver
13	chr10:5324400-5326200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:5324400-5327400	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:5324600-5325800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:5324600-5326000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr10:5324600-5326000	Enhancers	Liver	Liver
18	chr10:5324600-5326400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:5324600-5326800	Enhancers	Fetal Thymus	thymus
20	chr10:5324800-5325800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:5324800-5325800	Weak transcription	Lung	lung
22	chr10:5325000-5325800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:5325000-5325800	Enhancers	Duodenum Mucosa	Duodenum
24	chr10:5325000-5327000	Flanking Active TSS	A549	lung
25	chr10:5325200-5325400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr10:5325200-5325400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr10:5325200-5325600	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr10:5325200-5325600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:5325200-5325800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr10:5325200-5325800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr10:5325200-5325800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:5325200-5325800	Enhancers	K562	blood
33	chr10:5325200-5326600	Enhancers	HMEC	breast
34	chr10:5325200-5326800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr10:5325200-5326800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr10:5325200-5326800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:5325200-5326800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:5325200-5326800	Enhancers	Adipose Nuclei	Adipose
39	chr10:5325200-5327000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:5325200-5327200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:5325200-5327600	Enhancers	Primary monocytes fromperipheralblood	blood

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