Variant report

Variant	rs17134860
Chromosome Location	chr5:112021672-112021673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112018949..112022294-chr5:112089786..112092475,3	MCF-7	breast:
2	chr5:112017960..112020508-chr5:112020777..112023084,3	K562	blood:
3	chr5:112018915..112020508-chr5:112020831..112023084,2	K562	blood:
4	chr5:112018990..112022293-chr5:112024063..112027716,5	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17134846	1.00[AMR][1000 genomes]
rs17134884	1.00[AMR][1000 genomes]
rs17134956	1.00[AMR][1000 genomes]
rs17134989	1.00[AMR][1000 genomes]
rs17135042	1.00[AMR][1000 genomes]
rs17164137	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112016400-112022600	Enhancers	NHDF-Ad	bronchial
2	chr5:112018800-112024200	Weak transcription	K562	blood
3	chr5:112019600-112021800	Enhancers	HSMM	muscle
4	chr5:112019600-112022000	Enhancers	Ovary	ovary
5	chr5:112019600-112022200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:112019600-112022600	Enhancers	Fetal Heart	heart
7	chr5:112019600-112022600	Enhancers	NHLF	lung
8	chr5:112020000-112021800	Enhancers	Osteobl	bone
9	chr5:112020000-112022200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:112020200-112022200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:112020200-112022600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:112020400-112021800	Weak transcription	Primary B cells from cord blood	blood
13	chr5:112020400-112024800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:112020600-112021800	Weak transcription	Psoas Muscle	Psoas
15	chr5:112020600-112023200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:112020600-112024200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:112020800-112021800	Weak transcription	Brain Angular Gyrus	brain
18	chr5:112020800-112021800	Weak transcription	Brain Anterior Caudate	brain
19	chr5:112020800-112022000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:112020800-112022200	Enhancers	Stomach Smooth Muscle	stomach
21	chr5:112020800-112022400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:112020800-112022400	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:112020800-112022600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:112020800-112022600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:112020800-112025000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:112021000-112022400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr5:112021000-112023400	Enhancers	HSMMtube	muscle
28	chr5:112021000-112026600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:112021000-112026600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:112021200-112022600	Weak transcription	Fetal Muscle Leg	muscle
31	chr5:112021200-112023000	Weak transcription	Brain Germinal Matrix	brain
32	chr5:112021600-112021800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:112021600-112021800	Enhancers	Fetal Brain Female	brain
34	chr5:112021600-112022000	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr5:112021600-112022400	Enhancers	Rectal Smooth Muscle	rectum
36	chr5:112021600-112023400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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