Variant report

Variant	rs17134865
Chromosome Location	chr5:112031025-112031026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112030920..112033533-chr5:112072037..112074629,2	MCF-7	breast:
2	chr5:112030715..112032884-chr5:112068786..112071232,2	K562	blood:
3	chr5:112030435..112033305-chr5:112072369..112073887,2	K562	blood:
4	chr5:112030572..112032365-chr5:112252746..112254378,2	K562	blood:
5	chr5:112024489..112026491-chr5:112028253..112031270,3	K562	blood:

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2416294	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112027000-112032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:112029800-112031400	Enhancers	HSMM	muscle
3	chr5:112030200-112031400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:112030200-112031400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:112030200-112031400	Flanking Active TSS	K562	blood
6	chr5:112030400-112031200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:112030400-112032000	Enhancers	Dnd41	blood
8	chr5:112030600-112031200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:112030600-112031200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:112030600-112031200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr5:112030600-112031400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:112030600-112031400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:112030600-112031400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:112030600-112031400	Flanking Active TSS	HSMMtube	muscle
15	chr5:112030600-112031400	Enhancers	NHDF-Ad	bronchial
16	chr5:112030600-112031400	Enhancers	NHLF	lung
17	chr5:112030800-112031200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:112030800-112031200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:112030800-112031400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:112030800-112031400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:112031000-112031200	Enhancers	HUVEC	blood vessel
22	chr5:112031000-112031400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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