Variant report

Variant	rs17135215
Chromosome Location	chr5:112292127-112292128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112288458..112290057-chr5:112290062..112292637,2	K562	blood:
2	chr5:112291720..112294004-chr5:112309905..112311791,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10447234	1.00[CEU][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10515450	1.00[ASN][1000 genomes]
rs10515451	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515452	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11241186	1.00[CEU][hapmap];1.00[CHD][hapmap];0.80[EUR][1000 genomes]
rs12152818	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12152991	1.00[CEU][hapmap];1.00[CHD][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12187307	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188113	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs17553240	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55915006	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56209573	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56315627	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56364425	1.00[ASN][1000 genomes]
rs56398453	0.83[ASN][1000 genomes]
rs58304718	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs728347	0.91[GIH][hapmap]
rs73789249	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73789251	1.00[ASN][1000 genomes]
rs73789252	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73789253	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73789254	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv599394	chr5:112185491-112446323	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1019756	chr5:112242315-112325943	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17135215	DCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112289400-112293400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112291600-112297600	Enhancers	HepG2	liver
3	chr5:112291800-112292600	Enhancers	A549	lung
4	chr5:112291800-112294400	Enhancers	Brain Germinal Matrix	brain

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