The 2.0 version of rSNPBase

Variant report

Variant rs17135394
Chromosome Location chr5:112513985-112513986
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112500800-112518400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr5:112503200-112514000 Weak transcription Fetal Stomach stomach
3 chr5:112503800-112514800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr5:112504800-112525600 Weak transcription Esophagus oesophagus
5 chr5:112505800-112521400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr5:112506200-112518200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr5:112506400-112521600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr5:112507000-112526000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr5:112512000-112514200 Enhancers Right Atrium heart
10 chr5:112512000-112515600 Enhancers Liver Liver
11 chr5:112512000-112515800 Enhancers Left Ventricle heart
12 chr5:112512000-112516200 Enhancers Right Ventricle heart
13 chr5:112512200-112515800 Enhancers Psoas Muscle Psoas
14 chr5:112512400-112514400 Weak transcription Stomach Mucosa stomach
15 chr5:112512600-112521400 Weak transcription Brain Angular Gyrus brain
16 chr5:112512800-112518400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr5:112513000-112514200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr5:112513000-112521400 Weak transcription NHEK skin
19 chr5:112513600-112514000 Flanking Active TSS Fetal Heart heart
20 chr5:112513600-112514200 Enhancers H1 Cell Line embryonic stem cell
21 chr5:112513600-112514800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr5:112513600-112515200 Enhancers Fetal Lung lung
23 chr5:112513600-112515200 Enhancers HSMMtube muscle
24 chr5:112513600-112515400 Enhancers HUES48 Cell Line embryonic stem cell
25 chr5:112513600-112515600 Enhancers HUES64 Cell Line embryonic stem cell
26 chr5:112513600-112515600 Enhancers iPS-15b Cell Line embryonic stem cell
27 chr5:112513600-112515600 Enhancers Ovary ovary
28 chr5:112513600-112516000 Enhancers HUES6 Cell Line embryonic stem cell
29 chr5:112513600-112516000 Enhancers iPS-20b Cell Line embryonic stem cell
30 chr5:112513800-112514000 Enhancers H9 Cell Line embryonic stem cell
31 chr5:112513800-112514000 Enhancers Fetal Kidney kidney
32 chr5:112513800-112514200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
33 chr5:112513800-112514200 Enhancers HSMM muscle
34 chr5:112513800-112514400 Genic enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr5:112513800-112514400 Enhancers Lung lung
36 chr5:112513800-112514400 Enhancers Skeletal Muscle Male skeletal muscle
37 chr5:112513800-112514600 Enhancers Breast Myoepithelial Primary Cells Breast
38 chr5:112513800-112515000 Enhancers Adipose Nuclei Adipose
39 chr5:112513800-112515200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr5:112513800-112515200 Enhancers Fetal Muscle Leg muscle
41 chr5:112513800-112515600 Enhancers Skeletal Muscle Female skeletal muscle
42 chr5:112513800-112515800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
43 chr5:112513800-112515800 Enhancers Colon Smooth Muscle Colon
44 chr5:112513800-112515800 Enhancers Pancreatic Islets Pancreatic Islet
45 chr5:112513800-112515800 Enhancers Rectal Smooth Muscle rectum
46 chr5:112513800-112516000 Enhancers Stomach Smooth Muscle stomach
47 chr5:112513800-112517000 Enhancers iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015