Variant report

Variant	rs17135589
Chromosome Location	chr11:77083541-77083542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77081708..77083862-chr11:77084179..77086805,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1130059	0.86[EUR][1000 genomes]
rs1453342	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17135547	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17135578	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17135582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135588	0.93[EUR][1000 genomes]
rs17135598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418374	0.80[EUR][1000 genomes]
rs28561651	0.80[EUR][1000 genomes]
rs58956786	1.00[EUR][1000 genomes]
rs59602069	1.00[EUR][1000 genomes]
rs59695040	0.86[EUR][1000 genomes]
rs60470770	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:77033400-77090400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:77034400-77086200	Weak transcription	NHLF	lung
4	chr11:77043400-77083600	Weak transcription	Thymus	Thymus
5	chr11:77043800-77088400	Weak transcription	Colonic Mucosa	Colon
6	chr11:77046200-77092400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:77046800-77121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:77047200-77096000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:77047400-77089000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:77047400-77090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:77048600-77087800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:77052600-77085600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:77055000-77085000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:77055200-77092200	Weak transcription	Small Intestine	intestine
15	chr11:77055200-77117600	Weak transcription	Pancreas	Pancrea
16	chr11:77057400-77088000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:77059800-77085800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:77059800-77088800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:77060400-77084000	Weak transcription	Fetal Stomach	stomach
20	chr11:77064200-77102800	Weak transcription	Brain Substantia Nigra	brain
21	chr11:77064600-77085400	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:77064800-77085200	Weak transcription	Osteobl	bone
23	chr11:77066000-77084000	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:77066800-77090000	Weak transcription	Brain Angular Gyrus	brain
25	chr11:77067000-77085600	Weak transcription	A549	lung
26	chr11:77067000-77088000	Weak transcription	Gastric	stomach
27	chr11:77067000-77088200	Weak transcription	Liver	Liver
28	chr11:77067000-77092800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:77067000-77093800	Weak transcription	Psoas Muscle	Psoas
30	chr11:77067000-77097000	Weak transcription	Esophagus	oesophagus
31	chr11:77067200-77111800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:77068600-77085600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:77068600-77085800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:77068800-77097000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:77069000-77090000	Weak transcription	Fetal Lung	lung
36	chr11:77069200-77086000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:77069600-77085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:77070000-77083800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:77070000-77102000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:77070200-77083800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:77070400-77083600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:77070400-77083600	Weak transcription	Fetal Intestine Large	intestine
43	chr11:77070400-77083800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:77071200-77087400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:77072400-77084200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr11:77072400-77085200	Weak transcription	HSMMtube	muscle
47	chr11:77072600-77083600	Weak transcription	NHEK	skin
48	chr11:77075200-77083600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:77075200-77084000	Weak transcription	HSMM	muscle
50	chr11:77075200-77097200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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