Variant report

Variant	rs17135654
Chromosome Location	chr11:77124449-77124450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77111729..77114389-chr11:77123441..77126000,2	MCF-7	breast:
2	chr11:77123513..77125266-chr11:77129067..77130720,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17135482	1.00[MKK][hapmap]
rs17135545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1892789	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77123000-77131400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:77123400-77124600	Enhancers	Colonic Mucosa	Colon
3	chr11:77123400-77125200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:77123400-77125200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:77123400-77131600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:77123400-77147000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:77123400-77147200	Weak transcription	Pancreas	Pancrea
8	chr11:77123600-77125000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:77123600-77129400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:77123600-77132600	Weak transcription	Stomach Mucosa	stomach
11	chr11:77123600-77135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:77123600-77135800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:77123800-77124600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr11:77123800-77125400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:77123800-77126200	Weak transcription	Fetal Stomach	stomach
16	chr11:77123800-77126600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:77123800-77129200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:77123800-77129200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:77123800-77129200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:77124000-77125000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:77124000-77126600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr11:77124000-77128200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:77124000-77128400	Weak transcription	GM12878-XiMat	blood
24	chr11:77124000-77128800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:77124000-77129400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:77124000-77131000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:77124000-77135000	Weak transcription	Brain Anterior Caudate	brain
28	chr11:77124200-77126600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr11:77124200-77128400	Weak transcription	Fetal Intestine Large	intestine
30	chr11:77124200-77128400	Weak transcription	Fetal Intestine Small	intestine
31	chr11:77124200-77128400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:77124200-77129600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:77124200-77147000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:77124400-77124600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:77124400-77124800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:77124400-77124800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:77124400-77125400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr11:77124400-77125800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:77124400-77126600	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr11:77124400-77126600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr11:77124400-77129400	Weak transcription	Rectal Mucosa Donor 31	rectum

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