Variant report

Variant	rs17137236
Chromosome Location	chr7:7790546-7790547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7776217..7779160-chr7:7788471..7790651,2	MCF-7	breast:
2	chr7:7789196..7791456-chr7:7796401..7799287,2	K562	blood:

Variant related genes	Relation type
ENSG00000270314	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11984316	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12112667	1.00[CHB][hapmap]
rs1541550	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1541552	0.87[ASN][1000 genomes]
rs17136904	0.82[EUR][1000 genomes]
rs17136942	0.84[EUR][1000 genomes]
rs17136944	0.84[EUR][1000 genomes]
rs17136971	0.84[EUR][1000 genomes]
rs17137001	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17137046	0.84[EUR][1000 genomes]
rs17137076	0.90[EUR][1000 genomes]
rs17137195	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17137480	1.00[CHB][hapmap]
rs17482123	1.00[CHB][hapmap]
rs2068638	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2110553	1.00[CHB][hapmap]
rs4725015	1.00[CHB][hapmap]
rs4725024	1.00[CHB][hapmap]
rs6956000	0.90[EUR][1000 genomes]
rs6956186	0.90[EUR][1000 genomes]
rs6958003	0.84[EUR][1000 genomes]
rs6958461	0.84[EUR][1000 genomes]
rs6962938	0.87[ASN][1000 genomes]
rs6963595	0.87[ASN][1000 genomes]
rs6971274	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6979614	0.86[EUR][1000 genomes]
rs717297	1.00[CHB][hapmap]
rs73673805	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73673806	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7456324	1.00[CHB][hapmap]
rs7777879	1.00[CHB][hapmap]
rs972648	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv887477	chr7:7531819-7810122	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv887483	chr7:7682439-7798217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv887487	chr7:7740914-7802561	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv887488	chr7:7770203-7794484	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7759400-7791200	Weak transcription	Esophagus	oesophagus
2	chr7:7771600-7791000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:7773000-7802000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:7778600-7797400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:7779800-7796000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:7779800-7800200	Weak transcription	Thymus	Thymus
7	chr7:7783000-7791200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:7785600-7800800	Weak transcription	Primary B cells from cord blood	blood
9	chr7:7785800-7791200	Weak transcription	Psoas Muscle	Psoas
10	chr7:7786000-7791200	Weak transcription	Right Ventricle	heart
11	chr7:7786200-7791000	Weak transcription	Fetal Intestine Small	intestine
12	chr7:7786400-7790600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:7786400-7791200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:7786400-7800200	Weak transcription	Fetal Thymus	thymus
15	chr7:7787200-7790800	Weak transcription	Fetal Heart	heart
16	chr7:7787200-7790800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:7788600-7790600	Enhancers	Liver	Liver
18	chr7:7789800-7791600	Enhancers	Colon Smooth Muscle	Colon
19	chr7:7790000-7790600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr7:7790000-7790600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr7:7790200-7790600	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr7:7790200-7791000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:7790200-7791800	Enhancers	HepG2	liver
24	chr7:7790400-7790800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr7:7790400-7791000	Enhancers	Brain Substantia Nigra	brain
26	chr7:7790400-7791000	Enhancers	Duodenum Mucosa	Duodenum
27	chr7:7790400-7791600	Active TSS	Stomach Smooth Muscle	stomach
28	chr7:7790400-7801400	Weak transcription	Stomach Mucosa	stomach

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