Variant report

Variant	rs17137585
Chromosome Location	chr7:71351389-71351390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17144035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17144108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944049	1.00[AMR][1000 genomes]
rs6944073	1.00[AMR][1000 genomes]
rs6964547	1.00[AMR][1000 genomes]
rs6968063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360049	1.00[AMR][1000 genomes]
rs7808240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7810667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1017367	chr7:71339782-71476575	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71349600-71352600	Weak transcription	Thymus	Thymus
2	chr7:71349600-71353600	Weak transcription	Pancreas	Pancrea
3	chr7:71350400-71352000	Strong transcription	Fetal Thymus	thymus
4	chr7:71350600-71351400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:71350600-71351400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:71350600-71351400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:71350600-71351400	Active TSS	Brain Angular Gyrus	brain
8	chr7:71350600-71351400	Active TSS	Brain Cingulate Gyrus	brain
9	chr7:71350600-71352000	Enhancers	Dnd41	blood
10	chr7:71350800-71351400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:71350800-71351400	Enhancers	Primary hematopoietic stem cells	blood
12	chr7:71350800-71351400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:71350800-71351400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:71351000-71351400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:71351000-71351400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr7:71351000-71351400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:71351000-71351400	Active TSS	Brain Anterior Caudate	brain
18	chr7:71351000-71351400	Active TSS	Brain Hippocampus Middle	brain
19	chr7:71351000-71351400	Enhancers	Fetal Brain Female	brain
20	chr7:71351200-71351400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:71351200-71351400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:71351200-71351400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr7:71351200-71351400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:71351200-71351400	Flanking Active TSS	Brain Substantia Nigra	brain
25	chr7:71351200-71351400	Enhancers	NH-A	brain
26	chr7:71351200-71351600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:71351200-71351600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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