Variant report

Variant	rs17137774
Chromosome Location	chr5:114756121-114756122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114755931..114757845-chr5:114758052..114760367,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12514425	0.89[EUR][1000 genomes]
rs12519685	0.90[EUR][1000 genomes]
rs3852203	0.89[EUR][1000 genomes]
rs71579498	0.87[EUR][1000 genomes]
rs71579499	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3485451	chr5:114755754-114756514	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3485452	chr5:114755754-114756514	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2609149	chr5:114755821-114758499	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114749400-114756600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:114750000-114758000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr5:114751000-114756200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr5:114751200-114759400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:114751200-114760200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:114751600-114758000	Weak transcription	Right Ventricle	heart
7	chr5:114751800-114759400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:114752000-114759400	Weak transcription	Lung	lung
9	chr5:114752600-114758200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:114753400-114756400	Enhancers	Stomach Mucosa	stomach
11	chr5:114753400-114758600	Weak transcription	Brain Anterior Caudate	brain
12	chr5:114753800-114756400	Enhancers	Hela-S3	cervix
13	chr5:114754000-114756400	Enhancers	NHDF-Ad	bronchial
14	chr5:114754000-114761600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:114754400-114756400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:114754400-114756400	Enhancers	HUVEC	blood vessel
17	chr5:114754600-114756200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:114754600-114756200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr5:114754600-114756200	Enhancers	NHLF	lung
20	chr5:114754600-114756400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:114754600-114756400	Enhancers	NHEK	skin
22	chr5:114754800-114756200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:114754800-114756400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:114754800-114756400	Enhancers	HMEC	breast
25	chr5:114754800-114766800	Weak transcription	Fetal Intestine Large	intestine
26	chr5:114755000-114756400	Enhancers	NH-A	brain
27	chr5:114755000-114756400	Enhancers	Osteobl	bone
28	chr5:114755000-114758000	Weak transcription	Colonic Mucosa	Colon
29	chr5:114755000-114758400	Weak transcription	Pancreas	Pancrea
30	chr5:114755200-114756200	Enhancers	Right Atrium	heart
31	chr5:114755200-114756200	Enhancers	HSMM	muscle
32	chr5:114755200-114756400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:114755200-114758400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr5:114755200-114762200	Weak transcription	Fetal Intestine Small	intestine
35	chr5:114755400-114756200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:114755400-114756200	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr5:114755400-114756200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:114755400-114756200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:114755400-114756200	Enhancers	Adipose Nuclei	Adipose
40	chr5:114755400-114756200	Enhancers	Fetal Muscle Leg	muscle
41	chr5:114755400-114756200	Enhancers	Psoas Muscle	Psoas
42	chr5:114755400-114756200	Enhancers	HSMMtube	muscle
43	chr5:114755400-114756400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr5:114755400-114756400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr5:114755400-114756400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr5:114755400-114756400	Enhancers	Small Intestine	intestine
47	chr5:114755600-114756200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:114755600-114756200	Enhancers	Fetal Heart	heart
49	chr5:114755800-114756200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:114755800-114756200	Enhancers	A549	lung

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