Variant report

Variant	rs17138794
Chromosome Location	chr7:18262273-18262274
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:18162960..18165291-chr7:18262204..18264807,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1007192	0.84[ASN][1000 genomes]
rs10265242	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10281630	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs109251	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1178311	0.93[ASN][1000 genomes]
rs1178313	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1178314	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1178315	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1178316	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1178331	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs122617	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1431334	0.83[ASN][1000 genomes]
rs17418362	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1919317	0.81[ASN][1000 genomes]
rs2005774	0.83[ASN][1000 genomes]
rs2567209	0.86[ASN][1000 genomes]
rs2731554	0.92[ASN][1000 genomes]
rs302140	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs302141	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs302147	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs302148	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs302153	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs302155	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs302162	0.82[ASN][1000 genomes]
rs302168	0.81[AFR][1000 genomes]
rs302173	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs302176	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34461394	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35307869	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35676223	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs366909	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436270	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73062451	0.81[ASN][1000 genomes]
rs758089	0.83[ASN][1000 genomes]
rs917329	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1026629	chr7:17862477-18362404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025023	chr7:17865796-18357630	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv606357	chr7:17938491-18375245	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv606358	chr7:18084843-18416097	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
8	nsv887810	chr7:18193589-18391557	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv830914	chr7:18196730-18376047	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1029901	chr7:18205779-18387956	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv830916	chr7:18254299-18433349	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18260800-18264000	Enhancers	Primary B cells from cord blood	blood
2	chr7:18261000-18263200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr7:18261200-18262400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:18261200-18262400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:18261400-18262600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:18261400-18262600	Enhancers	Primary hematopoietic stem cells	blood
7	chr7:18261600-18262400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr7:18261600-18262400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr7:18261600-18262600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr7:18261800-18263800	Weak transcription	Fetal Heart	heart
11	chr7:18261800-18267600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:18262000-18262400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:18262000-18267400	Weak transcription	Fetal Intestine Large	intestine
14	chr7:18262200-18262400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links