Variant report

Variant	rs17139283
Chromosome Location	chr7:18552960-18552961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17139280	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs801767	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18542000-18553200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:18543000-18554400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:18545600-18554200	Weak transcription	Fetal Brain Female	brain
4	chr7:18549000-18554400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:18549000-18557000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:18549000-18557400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:18549000-18560000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:18549000-18561600	Weak transcription	Brain Substantia Nigra	brain
9	chr7:18549200-18553000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:18549200-18553000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:18549200-18553000	Weak transcription	Left Ventricle	heart
12	chr7:18549200-18560200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:18549400-18553000	Weak transcription	Psoas Muscle	Psoas
14	chr7:18549400-18554400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:18549600-18553200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:18550000-18553000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:18550000-18557200	Weak transcription	Right Atrium	heart
18	chr7:18550000-18560200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:18550000-18560200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:18550200-18557400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:18550400-18554400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:18550400-18554600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:18550400-18554600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:18550600-18554800	Weak transcription	Fetal Heart	heart
25	chr7:18550600-18560000	Weak transcription	HSMMtube	muscle
26	chr7:18550800-18554200	Weak transcription	Osteobl	bone
27	chr7:18551200-18553000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:18551200-18554400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:18551200-18554800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr7:18551200-18560000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:18551400-18554400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:18551400-18554600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:18551400-18557200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr7:18551400-18568400	Weak transcription	Aorta	Aorta
35	chr7:18551600-18553000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:18551600-18554400	Weak transcription	NHEK	skin
37	chr7:18551600-18560200	Weak transcription	HMEC	breast
38	chr7:18551800-18554200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:18551800-18554400	Weak transcription	NH-A	brain
40	chr7:18551800-18559000	Weak transcription	Primary B cells from cord blood	blood
41	chr7:18552200-18554800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:18552400-18553400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr7:18552600-18553000	Weak transcription	NHDF-Ad	bronchial
44	chr7:18552600-18553600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:18552800-18553400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr7:18552800-18555400	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr7:18552800-18555600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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