Variant report

Variant	rs17139311
Chromosome Location	chr7:18591235-18591236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17150238	1.00[CHB][hapmap]
rs17347842	1.00[CEU][hapmap]
rs2106506	1.00[CHB][hapmap]
rs73060381	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18561000-18592600	Weak transcription	NHEK	skin
2	chr7:18561000-18598000	Weak transcription	HMEC	breast
3	chr7:18574000-18592600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:18574600-18598400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:18581000-18592200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:18581200-18592000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:18581200-18592200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:18581200-18592200	Weak transcription	Stomach Mucosa	stomach
9	chr7:18581200-18600400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:18581600-18620200	Weak transcription	HSMMtube	muscle
11	chr7:18581800-18592000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:18581800-18592000	Weak transcription	NH-A	brain
13	chr7:18581800-18592600	Weak transcription	Left Ventricle	heart
14	chr7:18582000-18592000	Weak transcription	Osteobl	bone
15	chr7:18582000-18592200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:18582000-18594400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:18582200-18594400	Weak transcription	NHDF-Ad	bronchial
18	chr7:18583200-18591400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:18585000-18592800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:18586000-18598400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:18590200-18592200	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:18590400-18591400	Weak transcription	Brain Substantia Nigra	brain
23	chr7:18590400-18592000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:18590600-18592200	Weak transcription	Aorta	Aorta
25	chr7:18590600-18592400	Enhancers	Fetal Brain Female	brain
26	chr7:18590600-18597800	Weak transcription	Fetal Heart	heart
27	chr7:18590600-18598400	Weak transcription	Psoas Muscle	Psoas
28	chr7:18590800-18591400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr7:18590800-18592600	Enhancers	Primary B cells from cord blood	blood
30	chr7:18591000-18592200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr7:18591000-18592400	Enhancers	Primary hematopoietic stem cells	blood
32	chr7:18591000-18592800	Enhancers	Fetal Brain Male	brain
33	chr7:18591000-18593200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:18591000-18593600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr7:18591200-18592200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:18591200-18592200	Weak transcription	Hela-S3	cervix
37	chr7:18591200-18592400	Enhancers	Brain Anterior Caudate	brain

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